MolNFT v1 · #34163 · protein

Crystal structure of human anti polyhydroxybutyrate antibody fv

2D7T · Anti polyhydroxybutyrate antibody fv, heavy chain: “Crystal structure of human anti polyhydroxybutyrate antibody fv”. X-ray diffraction, 2 pockets (best druggability 0.37). MolNFT v1 #34163 on GenesisL1: 3D structure, binding sites…

PDB: 2D7T
Type: protein
Length: 226 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Anti polyhydroxybutyrate antibody fv, heavy chain; Anti polyhydroxybutyrate antibody fv…
UniProt: Q9UL95, Q6GMX0
Pockets: 2 · best druggability 0.37

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
H	Anti polyhydroxybutyrate antibody fv, heavy chain	protein	116	10% helix, 48% strand	Q9UL95
L	Anti polyhydroxybutyrate antibody fv, light chain	protein	110	3% helix, 49% strand	Q6GMX0

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	105	0.37	0.74	23	empty
2	51	0.28	0.75	17	empty

Interfaces

1 interface between chains.

H–L · 790 Å² buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

2D7T · Crystal structure of human anti polyhydroxybutyrate antibody Fv · the same entry in another collection · chain H against H, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UL95
Every structure of UniProt Q6GMX0
Elsewhere: RCSB PDB 2D7T · PDBe 2D7T · UniProt Q9UL95 · UniProt Q6GMX0

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