MolNFT v1 · #34138 · protein

Crystal structure of mouse galectin-9 N-terminal crd (crystal form 1)

2D6K · Lectin, galactose binding, soluble 9: “Crystal structure of mouse galectin-9 N-terminal crd (crystal form 1)”. X-ray diffraction, 1 pocket (best druggability 0.67). MolNFT v1 #34138 on GenesisL1: 3D structure, binding sites and…

PDB: 2D6K
Type: protein
Length: 290 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lectin, galactose binding, soluble 9
UniProt: O08573
Pockets: 1 · best druggability 0.67

Structure

x-ray diffraction · 2 distinct chains · 3% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lectin, galactose binding, soluble 9	protein	147	2% helix, 55% strand	O08573
B	Lectin, galactose binding, soluble 9	protein	143	4% helix, 55% strand	O08573

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	128	0.67	0.89	27	empty

Interfaces

1 interface between chains.

A–B · 543 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

2D6K · Crystal structure of mouse galectin-9 N-terminal CRD (crystal form 1) · the same entry in another collection · chain A against A, TM-score 1.00
O08573 · AlphaFold monomer V2.0 prediction for galectin-9 (O08573) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O08573
Elsewhere: RCSB PDB 2D6K · PDBe 2D6K · UniProt O08573

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