MolNFT v1 · #34102 · protein

Solution structure of asabf, antibacterial peptide isolated from a nematode, ascaris suum

2D56: “Solution structure of asabf, antibacterial peptide isolated from a nematode, ascaris suum”. Solution nmr, 1 pocket (best druggability 0.41). MolNFT v1 #34102 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2D56
Type: protein
Length: 53 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Asabf
UniProt: P90683
Pockets: 1 · best druggability 0.41

Structure

solution nmr · 1 distinct chain · 25% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Asabf	protein	53	25% helix, 15% strand	P90683

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	117	0.41	0.76	26	empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

2D56 · Solution Structure of ASABF, Antibacterial Peptide Isolated from a Nematode, Ascaris Suum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P90683
Elsewhere: RCSB PDB 2D56 · PDBe 2D56 · UniProt P90683

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