MolNFT v1 · #34047 · protein
Crystal structures of collagen model peptides (pro-pro-gly) 4-hyp-hyp-gly-(pro-pro-GLY)4
2D3H · Collagen model peptides (pro-pro-GLY)4-hyp-hyp…: “Crystal structures of collagen model peptides (pro-pro-gly) 4-hyp-hyp-gly-(pro-pro-GLY)4”. X-ray diffraction. MolNFT v1 #34047 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 2D3H
- Type
- protein
- Length
- 147 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Collagen model peptides (pro-pro-GLY)4-hyp-hyp- gly-(pro-pro-GLY)4
Structure
x-ray diffraction · 4 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, F | Collagen model peptides (pro-pro-GLY)4-hyp-hyp- gly-(pro-pro-GLY)4 | protein | 24 | 0% helix, 0% strand | — |
| C | Collagen model peptides (pro-pro-GLY)4-hyp-hyp- gly-(pro-pro-GLY)4 | protein | 25 | 0% helix, 0% strand | — |
| D | Collagen model peptides (pro-pro-GLY)4-hyp-hyp- gly-(pro-pro-GLY)4 | protein | 25 | 0% helix, 0% strand | — |
| E | Collagen model peptides (pro-pro-GLY)4-hyp-hyp- gly-(pro-pro-GLY)4 | protein | 25 | 0% helix, 0% strand | — |
Interfaces
12 interfaces between chains.
- E–F · 728 Ų buried · 8 hydrogen bonds · protein-protein
- D–F · 728 Ų buried · 10 hydrogen bonds · protein-protein
- D–E · 724 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 723 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 713 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (hydroxylation).
Compared structures
- 2D3H · Crystal structures of collagen model peptides (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2D3H · PDBe 2D3H
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