MolNFT v1 · #34012 · protein
Crystal structure of atypical cytoplasmic ABC-ATPase sufc from thermus thermophilus HB8
2D2F · Sufc protein: “Crystal structure of atypical cytoplasmic ABC-ATPase sufc from thermus thermophilus HB8”. X-ray diffraction, 2 ligands (ADP, MG), 2 pockets (best druggability 0.60). MolNFT v1 #34012 on GenesisL1: 3D structure…
- PDB
- 2D2F
- Type
- protein
- Length
- 246 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sufc protein
- UniProt
- Q5SH92
- Ligands
- ADP, MG
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sufc protein | protein | 246 | 41% helix, 27% strand | Q5SH92 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 282 | 0.60 | 0.79 | 35 | empty |
| 2 | 50 | 0.39 | 0.82 | 14 | empty |
Compared structures
- 2D2F · Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SH92
- Elsewhere: RCSB PDB 2D2F · PDBe 2D2F · UniProt Q5SH92
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