MolNFT v1 · #33948 · protein
Crystal structure of bst-RNase hiii in complex with MG2+
2D0B · Ribonuclease hiii: “Crystal structure of bst-RNase hiii in complex with MG2+”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.42). MolNFT v1 #33948 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2D0B
- Type
- protein
- Length
- 308 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonuclease hiii
- EC
- 3.1.26.4
- UniProt
- Q6L6Q4
- Ligands
- MG
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonuclease hiii (EC 3.1.26.4) | protein | 308 | 47% helix, 18% strand | Q6L6Q4 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 186 | 0.42 | 0.73 | 29 | empty |
| 2 | 55 | 0.28 | 0.75 | 11 | empty |
Compared structures
- 2D0B · Crystal structure of Bst-RNase HIII in complex with Mg2+ · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6L6Q4
- Elsewhere: RCSB PDB 2D0B · PDBe 2D0B · UniProt Q6L6Q4
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