MolNFT v1 · #33916 · protein

Crystal structure of galactokinase from pyrococcus horikoshi

2CZ9 · Probable galactokinase: “Crystal structure of galactokinase from pyrococcus horikoshi”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.74). MolNFT v1 #33916 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 2CZ9
Type: protein
Length: 346 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable galactokinase
EC: 2.7.1.6
UniProt: O58107
Ligands: CL
Pockets: 1 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable galactokinase (EC 2.7.1.6)	protein	346	45% helix, 24% strand	O58107

Ligands and binding sites

CL · Chloride ion · ion · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	525	0.74	0.82	52	CL, GOL

Compared structures

2CZ9 · Crystal Structure of galactokinase from Pyrococcus horikoshi · the same entry in another collection · chain A against A, TM-score 1.00
O58107 · AlphaFold monomer V2.0 prediction for galactokinase (O58107) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O58107
Elsewhere: RCSB PDB 2CZ9 · PDBe 2CZ9 · UniProt O58107

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