MolNFT v1 · #33823 · protein
Crystal structure of the single-stranded DNA binding protein from thermus thermophilus HB8
2CWA · Single-strand binding protein: “Crystal structure of the single-stranded DNA binding protein from thermus thermophilus HB8”. X-ray diffraction, 1 ligand (NO3), 1 pocket (best druggability 0.47). MolNFT v1 #33823 on GenesisL1: 3D…
- PDB
- 2CWA
- Type
- protein
- Length
- 206 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Single-strand binding protein
- UniProt
- Q5SLP9
- Ligands
- NO3
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 63% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Single-strand binding protein | protein | 206 | 6% helix, 63% strand | Q5SLP9 |
Ligands and binding sites
- NO3 · Nitrate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 128 | 0.47 | 0.78 | 27 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 2CWA · Crystal Structure Of The Single-stranded DNA Binding Protein From Thermus Thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00
- Q5SLP9 · AlphaFold monomer V2.0 prediction for single-stranded DNA-binding protein (Q5SLP9) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SLP9
- Elsewhere: RCSB PDB 2CWA · PDBe 2CWA · UniProt Q5SLP9
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