MolNFT v1 · #3359 · protein
St. louis cytochrome C' from the purple phototropic bacterium, rhodobacter capsulatus
1CPR: “St. louis cytochrome C' from the purple phototropic bacterium, rhodobacter capsulatus”. X-ray diffraction, 2 ligands (HEM, ZN), 1 pocket (best druggability 0.68). MolNFT v1 #3359 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1CPR
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C'
- UniProt
- P00147
- Ligands
- HEM, ZN
- Pockets
- 1 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 72% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C' | protein | 129 | 72% helix, 2% strand | P00147 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- ZN · Zinc ion · metal · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 297 | 0.68 | 0.83 | 36 | HEM |
Modifications
Observed in the structure: 2 cofactor (heme attachment).
Compared structures
- 1CPR · St. louis cytochrome C' from the purple phototropic bacterium, rhodobacter capsulatus · the same entry in another collection · chain A against A, TM-score 1.00
- P00147 · AlphaFold monomer V2.0 prediction for cytochrome C' (P00147) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00147
- Elsewhere: RCSB PDB 1CPR · PDBe 1CPR · UniProt P00147
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