MolNFT v1 · #3358 · protein

Cytochrome C' from rhodopseudomonas capsulata

1CPQ: “Cytochrome C' from rhodopseudomonas capsulata”. X-ray diffraction, 1 ligand (HEM), 1 pocket (best druggability 0.70). MolNFT v1 #3358 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1CPQ
Type: protein
Length: 129 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C'
UniProt: P00147
Ligands: HEM
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 73% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C'	protein	129	73% helix, 2% strand	P00147

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	287	0.70	0.84	36	HEM

Modifications

Observed in the structure: 2 cofactor (heme attachment).

Compared structures

1CPQ · Cytochrome C' from rhodopseudomonas capsulata · the same entry in another collection · chain A against A, TM-score 1.00
P00147 · AlphaFold monomer V2.0 prediction for cytochrome C' (P00147) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00147
Elsewhere: RCSB PDB 1CPQ · PDBe 1CPQ · UniProt P00147

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