MolNFT v1 · #33561 · protein

Solution structure of the N-terminal pH domain of ARAP2 protein from human

2COD · Centaurin-delta 1: “Solution structure of the N-terminal pH domain of ARAP2 protein from human”. Solution nmr, 1 pocket (best druggability 0.40). MolNFT v1 #33561 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2COD
Type: protein
Length: 115 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Centaurin-delta 1
UniProt: Q8WZ64
Pockets: 1 · best druggability 0.40

Structure

solution nmr · 1 distinct chain · 16% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Centaurin-delta 1	protein	115	16% helix, 35% strand	Q8WZ64

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	132	0.40	0.75	26	empty

Compared structures

2COD · Solution structure of the N-terminal PH domain of ARAP2 protein from human · the same entry in another collection · chain A against A, TM-score 1.00
Q8WZ64 · AlphaFold monomer V2.0 prediction for arf-gap with rho-gap domain, ank repeat and pH… · a predicted model of the same protein · chain A against A, TM-score 0.73

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8WZ64
Elsewhere: RCSB PDB 2COD · PDBe 2COD · UniProt Q8WZ64

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