MolNFT v1 · #33524 · protein
Family 10 xylanase
2CNC · Endoxylanase: “Family 10 xylanase”. X-ray diffraction, 5 ligands (XYS, XYP, AHR), 1 pocket (best druggability 0.61). MolNFT v1 #33524 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2CNC
- Type
- protein
- Length
- 350 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endoxylanase
- UniProt
- O68541
- Ligands
- XYS, XYP, AHR, MG, CL
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endoxylanase | protein | 350 | 41% helix, 18% strand | O68541 |
Ligands and binding sites
- XYS · alpha-D-xylopyranose · sugar · chains A
- XYP · beta-D-xylopyranose · sugar · chains A
- AHR · alpha-L-arabinofuranose · sugar · chains A
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 291 | 0.61 | 0.79 | 37 | XYS, XYP |
Compared structures
- 2CNC · Family 10 xylanase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O68541
- Elsewhere: RCSB PDB 2CNC · PDBe 2CNC · UniProt O68541
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