Chloroperoxidase complexed with formate (sugar cryoprotectant)

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 5% strand (DSSP).

Ligands and binding sites

• HEM · Protoporphyrin IX containing Fe · ligand · chains A
• MAN · alpha-D-mannopyranose · sugar · 12 copies · chains A
• NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
• BMA · beta-D-mannopyranose · sugar
• MN · Manganese (II) ion · metal · chains A
• FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Modifications

Observed in the structure: 14 glycan, 1 disulfide, 1 modified (O-glycosylation, N-glycosylation, disulfide, cyclization).

Compared structures

• 2CJ2 · chloroperoxidase complexed with formate (sugar cryoprotectant) · the same entry in another collection · chain A against A, TM-score 1.00
• P04963 · AlphaFold monomer V2.0 prediction for chloroperoxidase (P04963) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P04963
• Elsewhere: RCSB PDB 2CJ2 · PDBe 2CJ2 · UniProt P04963