MolNFT v1 · #33260 · protein
Crystal structures of the arabidopsis cinnamyl alcohol dehydrogenases ATCAD5
2CF6: “Crystal structures of the arabidopsis cinnamyl alcohol dehydrogenases ATCAD5”. X-ray diffraction, 2 ligands (NAP, ZN), 3 pockets (best druggability 0.73). MolNFT v1 #33260 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2CF6
- Type
- protein
- Length
- 352 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cinnamyl alcohol dehydrogenase
- EC
- 1.1.1.195
- UniProt
- O49482
- Ligands
- NAP, ZN
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cinnamyl alcohol dehydrogenase (EC 1.1.1.195) | protein | 352 | 21% helix, 24% strand | O49482 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 548 | 0.73 | 0.81 | 56 | NAP |
| 2 | 55 | 0.70 | 0.97 | 18 | empty |
| 3 | 114 | 0.39 | 0.75 | 18 | empty |
Compared structures
- 2CF6 · Crystal Structures of the Arabidopsis Cinnamyl Alcohol Dehydrogenases AtCAD5 · the same entry in another collection · chain A against A, TM-score 1.00
- O49482 · AlphaFold monomer V2.0 prediction for cinnamyl alcohol dehydrogenase 5 (O49482) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O49482
- Elsewhere: RCSB PDB 2CF6 · PDBe 2CF6 · UniProt O49482
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