MolNFT v1 · #33194 · protein
Structure of helix pomatia agglutinin with zinc and N-acetyl-alpha-D- galactoseamine (galnac)
2CCV: “Structure of helix pomatia agglutinin with zinc and N-acetyl-alpha-D- galactoseamine (galnac)”. X-ray diffraction, 3 ligands (A2G, NAG, ZN). MolNFT v1 #33194 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2CCV
- Type
- protein
- Length
- 99 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Helix pomatia agglutinin
- UniProt
- Q2F1K8
- Ligands
- A2G, NAG, ZN
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Helix pomatia agglutinin | protein | 99 | 3% helix, 56% strand | Q2F1K8 |
Ligands and binding sites
- A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- ZN · Zinc ion · metal · chains A
- GOL · Glycerol · additive · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 2CCV · Structure of Helix Pomatia agglutinin with zinc and N-acetyl-alpha-D- galactoseamine… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2F1K8
- Elsewhere: RCSB PDB 2CCV · PDBe 2CCV · UniProt Q2F1K8
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