MolNFT v1 · #32951 · protein
N-terminal domain of TLG1 complexed with N-terminus of VPS51
2C5K · Vacuolar protein sorting protein 51: “N-terminal domain of TLG1 complexed with N-terminus of VPS51”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #32951 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2C5K
- Type
- protein
- Length
- 111 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vacuolar protein sorting protein 51; T-snare affecting a late golgi compartment protein 1
- UniProt
- P36116, Q03322
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| P | Vacuolar protein sorting protein 51 | protein | 22 | 64% helix, 0% strand | P36116 |
| T | T-snare affecting a late golgi compartment protein 1 | protein | 89 | 79% helix, 0% strand | Q03322 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains P, T
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- P–T · 951 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 2C5K · N-terminal domain of tlg1 complexed with N-terminus of vps51 · the same entry in another collection · chain P against P, TM-score 1.00
- Q03322 · AlphaFold monomer V2.0 prediction for T-snare affecting a late golgi compartment protein… · a predicted model of the same protein · chain T against A, TM-score 0.96
- P36116 · AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated protein 51… · a predicted model of the same protein · chain P against A, TM-score 0.57
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P36116
- Every structure of UniProt Q03322
- Elsewhere: RCSB PDB 2C5K · PDBe 2C5K · UniProt P36116 · UniProt Q03322
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