MolNFT v1 · #32777 · protein

X-ray structure of beta-mannanase from blue mussel mytilus edulis

2C0H · Mannan endo-1,4-beta-mannosidase: “X-ray structure of beta-mannanase from blue mussel mytilus edulis”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.44). MolNFT v1 #32777 on GenesisL1: 3D structure, binding sites…

PDB: 2C0H
Type: protein
Length: 353 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mannan endo-1,4-beta-mannosidase
EC: 3.2.1.78
UniProt: Q8WPJ2
Ligands: SO4
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mannan endo-1,4-beta-mannosidase (EC 3.2.1.78)	protein	353	35% helix, 20% strand	Q8WPJ2

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	77	0.44	0.81	16	empty
2	119	0.37	0.73	27	empty

Compared structures

2C0H · X-ray structure of beta-mannanase from blue mussel Mytilus edulis · the same entry in another collection · chain A against A, TM-score 1.00
Q8WPJ2 · AlphaFold monomer V2.0 prediction for mannan endo-1,4-beta- mannosidase (Q8WPJ2) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8WPJ2
Elsewhere: RCSB PDB 2C0H · PDBe 2C0H · UniProt Q8WPJ2

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