MolNFT v1 · #32656 · protein

HIS354ALA escherichia COLI aminopeptidase P

2BWX: “HIS354ALA escherichia COLI aminopeptidase P”. X-ray diffraction, 2 ligands (MN, CL), 4 pockets (best druggability 0.51). MolNFT v1 #32656 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2BWX
Type: protein
Length: 440 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Aminopeptidase P
EC: 3.4.11.9
UniProt: P15034
Ligands: MN, CL
Pockets: 4 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Aminopeptidase P (EC 3.4.11.9)	protein	440	41% helix, 20% strand	P15034

Ligands and binding sites

MN · Manganese (II) ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	223	0.51	0.76	31	empty
2	104	0.47	0.80	20	empty
3	67	0.29	0.74	16	empty
4	53	0.27	0.74	15	empty

Compared structures

2BWX · His354Ala Escherichia coli Aminopeptidase P · the same entry in another collection · chain A against A, TM-score 1.00
P15034 · AlphaFold monomer V2.0 prediction for xaa-pro aminopeptidase (P15034) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P15034
Elsewhere: RCSB PDB 2BWX · PDBe 2BWX · UniProt P15034

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