MolNFT v1 · #32399 · protein
M144Q structure of nitrite reductase from alcaligenes xylosoxidans
2BP8 · Dissimilatory copper-containing nitrite reductase: “M144Q structure of nitrite reductase from alcaligenes xylosoxidans”. X-ray diffraction, 3 ligands (ZN, CU, SO4), 4 pockets (best druggability 0.51). MolNFT v1 #32399 on GenesisL1…
- PDB
- 2BP8
- Type
- protein
- Length
- 670 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dissimilatory copper-containing nitrite reductase
- UniProt
- O68601
- Ligands
- ZN, CU, SO4
- Pockets
- 4 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 11% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dissimilatory copper-containing nitrite reductase | protein | 335 | 11% helix, 39% strand | O68601 |
| B | Dissimilatory copper-containing nitrite reductase | protein | 335 | 10% helix, 39% strand | O68601 |
Ligands and binding sites
- ZN · Zinc ion · metal · 10 copies · chains A, B
- CU · Copper (II) ion · metal · 4 copies · chains A, B
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 291 | 0.51 | 0.74 | 31 | empty |
| 2 | 89 | 0.43 | 0.79 | 16 | ZN |
| 3 | 93 | 0.41 | 0.78 | 16 | ZN |
| 4 | 61 | 0.28 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 109 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 2BP8 · M144Q Structure of nitrite reductase from Alcaligenes xylosoxidans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O68601
- Elsewhere: RCSB PDB 2BP8 · PDBe 2BP8 · UniProt O68601
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.