MolNFT v1 · #32235 · protein
Drosophila melanogaster globin
2BK9 · CG9734-pa: “Drosophila melanogaster globin”. X-ray diffraction, 3 ligands (HEM, MG, CL), 1 pocket (best druggability 0.66). MolNFT v1 #32235 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2BK9
- Type
- protein
- Length
- 153 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CG9734-pa
- UniProt
- Q9VF15
- Ligands
- HEM, MG, CL
- Pockets
- 1 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CG9734-pa | protein | 153 | 77% helix, 1% strand | Q9VF15 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · chains A
- CXS · 3-cyclohexyl-1-propylsulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 230 | 0.66 | 0.83 | 26 | HEM |
Compared structures
- 2BK9 · Drosophila Melanogaster globin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VF15
- Elsewhere: RCSB PDB 2BK9 · PDBe 2BK9 · UniProt Q9VF15
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