MolNFT v1 · #32227 · protein
Crystal structure of the major celery allergen api G 1
2BK0 · Major allergen api G 1: “Crystal structure of the major celery allergen api G 1”. X-ray diffraction, 2 pockets (best druggability 0.82). MolNFT v1 #32227 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2BK0
- Type
- protein
- Length
- 306 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major allergen api G 1
- UniProt
- P49372
- Pockets
- 2 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Major allergen api G 1 | protein | 153 | 31% helix, 40% strand | P49372 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 679 | 0.82 | 0.86 | 56 | empty |
| 2 | 690 | 0.82 | 0.85 | 60 | empty |
Interfaces
1 interface between chains.
- A–B · 335 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 2BK0 · Crystal structure of the major celery allergen Api G 1 · the same entry in another collection · chain A against A, TM-score 1.00
- P49372 · AlphaFold monomer V2.0 prediction for major allergen api G 1, isoallergen 1 (P49372) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49372
- Elsewhere: RCSB PDB 2BK0 · PDBe 2BK0 · UniProt P49372
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