MolNFT v1 · #32108 · protein
Crystal structure of vinorine synthase
2BGH: “Crystal structure of vinorine synthase”. X-ray diffraction, 8 pockets (best druggability 0.79). MolNFT v1 #32108 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2BGH
- Type
- protein
- Length
- 825 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vinorine synthase
- EC
- 2.3.1.160
- UniProt
- Q70PR7
- Pockets
- 8 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vinorine synthase (EC 2.3.1.160) | protein | 413 | 31% helix, 24% strand | Q70PR7 |
| B | Vinorine synthase (EC 2.3.1.160) | protein | 412 | 29% helix, 24% strand | Q70PR7 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 959 | 0.79 | 0.80 | 74 | empty |
| 2 | 914 | 0.76 | 0.79 | 74 | empty |
| 3 | 381 | 0.59 | 0.76 | 49 | empty |
| 4 | 399 | 0.58 | 0.75 | 65 | empty |
| 5 | 63 | 0.46 | 0.84 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 790 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q70PR7
- Elsewhere: RCSB PDB 2BGH · PDBe 2BGH · UniProt Q70PR7
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