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MolNFT v1 · #32096 · protein

Bacillus cereus metallo-beta-lactamase (bcii) arg (121) cys mutant. solved at PH4.5 using 20MM ZNSO4 in the buffer. 1MM dtt and 1MM tcep- hcl were used as reducing agents. CYS221 is reduced.

2BG2 · Beta-lactamase II: “Bacillus cereus metallo-beta-lactamase (bcii) arg (121) cys mutant. solved at PH4.5 using 20MM ZNSO4 in the…”. X-ray diffraction, 3 ligands (ZN, SO4, CL), 2 pockets (best druggability 0.36). MolNFT v1 #32096 on…

PDB
2BG2
Type
protein
Length
436 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Beta-lactamase II
EC
3.5.2.6
UniProt
P04190
Ligands
ZN, SO4, CL
Pockets
2 · best druggability 0.36

Structure

x-ray diffraction · 2 distinct chains · 27% helix, 33% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ABeta-lactamase II (EC 3.5.2.6)protein21827% helix, 33% strandP04190
BBeta-lactamase II (EC 3.5.2.6)protein21827% helix, 33% strandP04190

Ligands and binding sites

  • ZN · Zinc ion · metal · 4 copies · chains A, B
  • SO4 · Sulfate ion · ion · 7 copies · chains A, B
  • CL · Chloride ion · ion · chains B
  • GOL · Glycerol · additive · 21 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11020.360.7422GOL, ZN, CL, SO4
2890.340.7418GOL, ZN

Interfaces

1 interface between chains.

  • A–B · 556 Ų buried · 11 hydrogen bonds · protein-protein

Compared structures

  • 2BG2 · Bacillus cereus metallo-beta-lactamase (BcII) Arg (121) Cys mutant. Solved at pH4.5 using… · the same entry in another collection · chain B against B, TM-score 1.00
  • P04190 · AlphaFold monomer V2.0 prediction for metallo-beta-lactamase type 2 (P04190) · a predicted model of the same protein · chain B against A, TM-score 0.99

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