MolNFT v1 · #31932 · protein

Mn form of E. COLI methionine aminopeptidase in complex with a quinolinyl sulfonamide inhibitor

2BB7: “Mn form of E. COLI methionine aminopeptidase in complex with a quinolinyl sulfonamide inhibitor”. X-ray diffraction, 3 ligands (QMS, MN, NA), 3 pockets (best druggability 0.57). MolNFT v1 #31932 on GenesisL1: 3D structure, binding…

PDB: 2BB7
Type: protein
Length: 258 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Methionine aminopeptidase
EC: 3.4.11.18
UniProt: P07906
Ligands: QMS, MN, NA
Pockets: 3 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Methionine aminopeptidase (EC 3.4.11.18)	protein	258	29% helix, 28% strand	P07906

Ligands and binding sites

QMS · N-(quinolin-8-yl)methanesulfonamide · ligand · chains A
MN · Manganese (II) ion · metal · 3 copies · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	147	0.57	0.82	29	MN, QMS
2	70	0.34	0.76	18	empty
3	52	0.23	0.72	15	empty

Compared structures

2BB7 · Mn Form Of E. coli Methionine Aminopeptidase In Complex With a quinolinyl sulfonamide… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07906
Elsewhere: RCSB PDB 2BB7 · PDBe 2BB7 · UniProt P07906

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