MolNFT v1 · #31925 · protein

Structure of yoss, a putative dutpase from bacillus subtilis

2BAZ · Hypothetical protein BSU20020: “Structure of yoss, a putative dutpase from bacillus subtilis”. X-ray diffraction, 4 pockets (best druggability 0.55). MolNFT v1 #31925 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2BAZ
Type: protein
Length: 384 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein BSU20020
UniProt: O34919
Pockets: 4 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Hypothetical protein BSU20020	protein	128	4% helix, 45% strand	O34919

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	246	0.55	0.77	37	empty
2	189	0.52	0.78	33	empty
3	214	0.52	0.77	30	empty
4	89	0.35	0.75	23	empty

Interfaces

3 interfaces between chains.

A–C · 1446 Å² buried · 18 hydrogen bonds · protein-protein
A–B · 1429 Å² buried · 17 hydrogen bonds · protein-protein
B–C · 1409 Å² buried · 19 hydrogen bonds · protein-protein

Compared structures

2BAZ · Structure of YosS, a putative dUTPase from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
O34919 · AlphaFold monomer V2.0 prediction for spbeta prophage-derived deoxyuridine… · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O34919
Elsewhere: RCSB PDB 2BAZ · PDBe 2BAZ · UniProt O34919

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