MolNFT v1 · #31858 · protein
Crystal structure of a rmlc-like cupin family protein with a double- stranded beta-helix fold (MJ0764) from methanocaldococcus jannaschii at 1.70 a resolution
2B8M · Hypothetical protein MJ0764: “Crystal structure of a rmlc-like cupin family protein with a double- stranded beta-helix fold (MJ0764) from…”. X-ray diffraction, 2 ligands (SO4, CL), 1 pocket (best druggability 0.50). MolNFT v1 #31858…
- PDB
- 2B8M
- Type
- protein
- Length
- 109 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein MJ0764
- UniProt
- Q58174
- Ligands
- SO4, CL
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein MJ0764 | protein | 109 | 4% helix, 48% strand | Q58174 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 112 | 0.50 | 0.80 | 18 | SO4, EDO |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 2B8M · Crystal structure of a rmlc-like cupin family protein with a double-stranded beta-helix… · the same entry in another collection · chain A against A, TM-score 1.00
- Q58174 · AlphaFold monomer V2.0 prediction for uncharacterized protein MJ0764 (Q58174) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58174
- Elsewhere: RCSB PDB 2B8M · PDBe 2B8M · UniProt Q58174
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