MolNFT v1 · #31720 · protein
Truncated S. aureus lytm, P 32 2 1 crystal form
2B44 · Glycyl-glycine endopeptidase lytm: “Truncated S. aureus lytm, P 32 2 1 crystal form”. X-ray diffraction, 2 ligands (ZN, PO4), 3 pockets (best druggability 0.44). MolNFT v1 #31720 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 2B44
- Type
- protein
- Length
- 258 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycyl-glycine endopeptidase lytm
- EC
- 3.4.24.75
- UniProt
- O33599
- Ligands
- ZN, PO4
- Pockets
- 3 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glycyl-glycine endopeptidase lytm (EC 3.4.24.75) | protein | 129 | 9% helix, 43% strand | O33599 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 110 | 0.44 | 0.78 | 28 | empty |
| 2 | 80 | 0.43 | 0.80 | 23 | PO4 |
| 3 | 88 | 0.38 | 0.77 | 20 | PO4 |
Interfaces
1 interface between chains.
- A–B · 445 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O33599
- Elsewhere: RCSB PDB 2B44 · PDBe 2B44 · UniProt O33599
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