MolNFT v1 · #31610 · protein

The crystal structure of the apoenzyme of the iron-sulfur-cluster-free hydrogenase (hmd)

2B0J · 5,10-methenyltetrahydromethanopterin hydrogenase: “The crystal structure of the apoenzyme of the iron-sulfur-cluster-free hydrogenase (hmd)”. X-ray diffraction, 2 pockets (best druggability 0.65). MolNFT v1 #31610 on GenesisL1: 3D…

PDB: 2B0J
Type: protein
Length: 344 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5,10-methenyltetrahydromethanopterin hydrogenase
EC: 1.12.98.2
UniProt: Q58194
Pockets: 2 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 55% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	5,10-methenyltetrahydromethanopterin hydrogenase (EC 1.12.98.2)	protein	344	55% helix, 13% strand	Q58194

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	577	0.65	0.75	34	empty
2	394	0.64	0.78	47	empty

Compared structures

2B0J · The crystal structure of the apoenzyme of the iron-sulfur-cluster-free hydrogenase (Hmd) · the same entry in another collection · chain A against A, TM-score 1.00
Q58194 · AlphaFold monomer V2.0 prediction for 5,10-methenyltetrahydromethanopterin hydrogenase… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58194
Elsewhere: RCSB PDB 2B0J · PDBe 2B0J · UniProt Q58194

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