MolNFT v1 · #31567 · protein

Crystal structure of a protein of unknown function from enterococcus faecalis V583

2AZ4 · Hypothetical protein EF2904: “Crystal structure of a protein of unknown function from enterococcus faecalis V583”. X-ray diffraction, 1 ligand (ZN), 9 pockets (best druggability 0.74). MolNFT v1 #31567 on GenesisL1: 3D structure…

PDB: 2AZ4
Type: protein
Length: 851 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein EF2904
UniProt: Q82ZZ3
Ligands: ZN
Pockets: 9 · best druggability 0.74

Structure

x-ray diffraction · 2 distinct chains · 26% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein EF2904	protein	425	26% helix, 23% strand	Q82ZZ3
B	Hypothetical protein EF2904	protein	426	27% helix, 23% strand	Q82ZZ3

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

9 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	965	0.74	0.77	73	empty
2	926	0.72	0.77	68	empty
3	314	0.61	0.78	23	empty
4	102	0.60	0.87	27	empty
5	287	0.59	0.78	26	empty

Interfaces

1 interface between chains.

A–B · 632 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

2AZ4 · Crystal Structure of a Protein of Unknown Function from Enterococcus faecalis V583 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q82ZZ3
Elsewhere: RCSB PDB 2AZ4 · PDBe 2AZ4 · UniProt Q82ZZ3

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