MolNFT v1 · #31254 · protein

Crystal structure of the putative regulatory protein

2AP1 · Putative regulator protein: “Crystal structure of the putative regulatory protein”. X-ray diffraction, 2 ligands (ZN, NA), 2 pockets (best druggability 0.44). MolNFT v1 #31254 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 2AP1
Type: protein
Length: 305 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative regulator protein
UniProt: Q8ZPZ9
Ligands: ZN, NA
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative regulator protein	protein	305	40% helix, 22% strand	Q8ZPZ9

Ligands and binding sites

ZN · Zinc ion · metal · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	204	0.44	0.74	34	empty
2	67	0.33	0.76	11	empty

Compared structures

2AP1 · Crystal structure of the putative regulatory protein · the same entry in another collection · chain A against A, TM-score 1.00
Q8ZPZ9 · AlphaFold monomer V2.0 prediction for N-acetyl-D-glucosamine kinase (Q8ZPZ9) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8ZPZ9
Elsewhere: RCSB PDB 2AP1 · PDBe 2AP1 · UniProt Q8ZPZ9

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