MolNFT v1 · #30700 · protein
Crystal structure of EMP47P carbohydrate recognition domain (crd), monoclinic crystal form 2
2A70: “Crystal structure of EMP47P carbohydrate recognition domain (crd), monoclinic crystal form 2”. X-ray diffraction, 1 pocket (best druggability 0.71). MolNFT v1 #30700 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2A70
- Type
- protein
- Length
- 444 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- EMP47P
- Pockets
- 1 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | EMP47P | protein | 222 | 9% helix, 45% strand | — |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 370 | 0.71 | 0.83 | 62 | EDO |
Interfaces
1 interface between chains.
- A–B · 464 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 2A70 · Crystal structure of Emp47p carbohydrate recognition domain (CRD), monoclinic crystal… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2A70 · PDBe 2A70
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