MolNFT v1 · #30698 · protein

Crystal structure of EMP47P carbohydrate recognition domain (crd), tetragonal crystal form

2A6Y · EMP47P (FORM1): “Crystal structure of EMP47P carbohydrate recognition domain (crd), tetragonal crystal form”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.33). MolNFT v1 #30698 on GenesisL1: 3D structure, binding…

PDB: 2A6Y
Type: protein
Length: 231 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: EMP47P (FORM1)
Ligands: SO4
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	EMP47P (FORM1)	protein	231	7% helix, 47% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	61	0.33	0.77	19	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

2A6Y · Crystal structure of Emp47p carbohydrate recognition domain (CRD), tetragonal crystal form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2A6Y · PDBe 2A6Y

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