MolNFT v1 · #30683 · protein
Crystal structure analysis of the anti-arsonate germline antibody 36- 65
2A6J · Germline antibody 36-65 Fab light chain: “Crystal structure analysis of the anti-arsonate germline antibody 36- 65”. X-ray diffraction, 5 pockets (best druggability 0.68). MolNFT v1 #30683 on GenesisL1: 3D structure, binding sites…
- PDB
- 2A6J
- Type
- protein
- Length
- 872 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Germline antibody 36-65 Fab light chain; Germline antibody 36-65 Fab heavy chain
- Pockets
- 5 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L, A | Germline antibody 36-65 Fab light chain | protein | 214 | 8% helix, 48% strand | — |
| H, B | Germline antibody 36-65 Fab heavy chain | protein | 222 | 7% helix, 48% strand | — |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 847 | 0.68 | 0.75 | 115 | empty |
| 2 | 291 | 0.52 | 0.75 | 49 | empty |
| 3 | 59 | 0.39 | 0.81 | 17 | empty |
| 4 | 86 | 0.34 | 0.74 | 23 | empty |
| 5 | 61 | 0.27 | 0.74 | 17 | empty |
Interfaces
4 interfaces between chains.
- L–H · 2153 Ų buried · 19 hydrogen bonds · protein-protein
- A–B · 2071 Ų buried · 19 hydrogen bonds · protein-protein
- L–B · 179 Ų buried · 2 hydrogen bonds · protein-protein
- H–B · 21 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 2A6J · Crystal structure analysis of the anti-arsonate germline antibody 36-65 · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2A6J · PDBe 2A6J
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