Crystal structures of AMFP486, a cyan fluorescent protein from anemonia majano, and variants

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 57% strand (DSSP).

Ligands and binding sites

• CR7 · [(4Z)-2-[(1S)-1,5-diaminopentyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid · ligand · chains A
• BME · Beta-mercaptoethanol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Modifications

Observed in the structure: 3 covalent (covalent ligand, additive adduct).

Compared structures

• 2A46 · Crystal structures of amFP486, a cyan fluorescent protein from Anemonia majano, and… · the same entry in another collection · chain A against A, TM-score 1.00
• Q9U6Y6 · AlphaFold monomer V2.0 prediction for GFP-like fluorescent chromoprotein AMFP486 (Q9U6Y6) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt Q9U6Y6
• Elsewhere: RCSB PDB 2A46 · PDBe 2A46 · UniProt Q9U6Y6