MolNFT v1 · #30408 · RNA
Structure of the purine-pyrimidine alternating RNA double helix, R(GUAUAUA)D(C) , with a 3'-terminal deoxy residue
246D · DNA/RNA (5'-R(*GP*UP*AP*UP*AP*UP*AP*)-D(*C)-3'): “Structure of the purine-pyrimidine alternating RNA double helix, R(GUAUAUA)D(C) , with a 3'-terminal deoxy…”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #30408 on GenesisL1: 3D…
- PDB
- 246D
- Type
- RNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA/RNA (5'-R(*GP*UP*AP*UP*AP*UP*AP*)-D(*C)-3')
- Ligands
- NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA/RNA (5'-R(*GP*UP*AP*UP*AP*UP*AP*)-D(*C)-3') | rna | 8 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 367 Ų buried · 34 hydrogen bonds · nucleic-nucleic
Compared structures
- 246D · Structure of the purine-pyrimidine alternating RNA double helix, R(GUAUAUA)D(C) , with a… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 246D · PDBe 246D
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