MolNFT v1 · #30350 · DNA

The structure of a new crystal form of a DNA dodecamer containing T.(O6ME)G base pairs

218D · DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*(6OG)P*CP*G)-3'): “The structure of a new crystal form of a DNA dodecamer containing T.(O6ME)G base pairs”. X-ray diffraction. MolNFT v1 #30350 on GenesisL1: 3D structure, binding sites and…

PDB: 218D
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*(6OG)P*CP*G)-3')

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(CPGPTPGPAPAPTPTPCP(6OG)PCPG)-3')	dna	12	—	—

Interfaces

1 interface between chains.

A–B · 599 Å² buried · 63 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 2 modified (nucleotide modification).

Compared structures

218D · The structure of a new crystal form of a DNA dodecamer containing T.(O6ME)G base pairs · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 218D · PDBe 218D

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