MolNFT v1 · #303 · protein
Solution structure of desulfovibrio vulgaris (hildenborough) ferrocytochrome C3, NMR, 20 structures
1A2I: “Solution structure of desulfovibrio vulgaris (hildenborough) ferrocytochrome C3, NMR, 20 structures”. Solution nmr, 1 ligand (HEC), 1 pocket (best druggability 0.75). MolNFT v1 #303 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1A2I
- Type
- protein
- Length
- 107 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C3
- UniProt
- P00131
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.75
Structure
solution nmr · 1 distinct chain · 12% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C3 | protein | 107 | 12% helix, 7% strand | P00131 |
Ligands and binding sites
- HEC · Heme C · ligand · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 580 | 0.75 | 0.82 | 67 | HEC |
Modifications
Observed in the structure: 8 cofactor (heme c attachment).
Compared structures
- 1A2I · Solution structure of desulfovibrio vulgaris (hildenborough) ferrocytochrome C3, NMR, 20… · the same entry in another collection · chain A against A, TM-score 1.00
- P00131 · AlphaFold monomer V2.0 prediction for cytochrome C3 (P00131) · a predicted model of the same protein · chain A against A, TM-score 0.94
- 1GX7 · Best model of the electron transfer complex between cytochrome c3 and [Fe]-hydrogenase · a predicted model of the same protein · chain A against E, TM-score 0.82
- 1GX7 · Best model of the electron transfer complex between cytochrome C3 and [fe]-hydrogenase · a predicted model of the same protein · chain A against E, TM-score 0.82
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00131
- Elsewhere: RCSB PDB 1A2I · PDBe 1A2I · UniProt P00131
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