MolNFT v1 · #30273 · protein

Synchrotron reduced form of the N-terminal domain of salmonella typhimurium ahpf

1ZYP · Alkyl hydroperoxide reductase subunit F: “Synchrotron reduced form of the N-terminal domain of salmonella typhimurium ahpf”. X-ray diffraction, 6 pockets (best druggability 0.38). MolNFT v1 #30273 on GenesisL1: 3D structure, binding…

PDB: 1ZYP
Type: protein
Length: 392 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alkyl hydroperoxide reductase subunit F
EC: 1.6.4.-
UniProt: P19480
Pockets: 6 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Alkyl hydroperoxide reductase subunit F (EC 1.6.4.-)	protein	196	38% helix, 21% strand	P19480

Pockets

6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	102	0.38	0.75	18	empty
2	102	0.38	0.75	24	empty
3	69	0.36	0.77	17	empty
4	92	0.35	0.75	20	empty
5	81	0.35	0.76	15	empty

Interfaces

1 interface between chains.

A–B · 584 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

1ZYP · Synchrotron reduced form of the N-terminal domain of Salmonella typhimurium AhpF · the same entry in another collection · chain A against A, TM-score 1.00
P19480 · AlphaFold monomer V2.0 prediction for alkyl hydroperoxide reductase subunit F (P19480) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P19480
Elsewhere: RCSB PDB 1ZYP · PDBe 1ZYP · UniProt P19480

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