MolNFT v1 · #30175 · protein
Crystal structure of a protein of unknown function VC0802 from vibrio cholerae, possible transport protein
1ZVP · Hypothetical protein VC0802: “Crystal structure of a protein of unknown function VC0802 from vibrio cholerae, possible transport protein”. X-ray diffraction, 6 pockets (best druggability 0.68). MolNFT v1 #30175 on GenesisL1: 3D…
- PDB
- 1ZVP
- Type
- protein
- Length
- 515 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein VC0802
- Pockets
- 6 · best druggability 0.68
Structure
x-ray diffraction · 4 distinct chains · 33% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein VC0802 | protein | 128 | 34% helix, 30% strand | — |
| B | Hypothetical protein VC0802 | protein | 128 | 34% helix, 30% strand | — |
| C | Hypothetical protein VC0802 | protein | 128 | 33% helix, 30% strand | — |
| D | Hypothetical protein VC0802 | protein | 131 | 31% helix, 28% strand | — |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 364 | 0.68 | 0.81 | 45 | empty |
| 2 | 320 | 0.66 | 0.81 | 38 | empty |
| 3 | 263 | 0.58 | 0.78 | 31 | empty |
| 4 | 255 | 0.55 | 0.77 | 32 | empty |
| 5 | 64 | 0.37 | 0.79 | 16 | empty |
Interfaces
5 interfaces between chains.
- A–D · 1909 Ų buried · 27 hydrogen bonds · protein-protein
- B–C · 1901 Ų buried · 28 hydrogen bonds · protein-protein
- A–B · 528 Ų buried · 8 hydrogen bonds · protein-protein
- B–D · 90 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 88 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1ZVP · Crystal Structure of a Protein of Unknown Function VC0802 from Vibrio cholerae, Possible… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1ZVP · PDBe 1ZVP
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