MolNFT v1 · #30116 · protein

Crystal structure of a DUF72 family protein (EF0366) from enterococcus faecalis V583 at 3.10 a resolution

1ZTV · Hypothetical protein: “Crystal structure of a DUF72 family protein (EF0366) from enterococcus faecalis V583 at 3.10 a resolution”. X-ray diffraction, 1 ligand (CL), 4 pockets (best druggability 0.81). MolNFT v1 #30116 on GenesisL1…

PDB: 1ZTV
Type: protein
Length: 554 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein
UniProt: Q838R9
Ligands: CL
Pockets: 4 · best druggability 0.81

Structure

x-ray diffraction · 2 distinct chains · 36% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein	protein	279	38% helix, 15% strand	Q838R9
B	Hypothetical protein	protein	275	35% helix, 16% strand	Q838R9

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1001	0.81	0.83	92	CL
2	85	0.44	0.80	16	empty
3	57	0.27	0.74	14	empty
4	51	0.26	0.73	13	empty

Interfaces

1 interface between chains.

A–B · 886 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

1ZTV · Crystal structure of a duf72 family protein (ef0366) from enterococcus faecalis v583 at… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q838R9
Elsewhere: RCSB PDB 1ZTV · PDBe 1ZTV · UniProt Q838R9

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