MolNFT v1 · #3008 · protein
The structure of cytochrome C6 from monoraphidium braunii, NMR, minimized average structure
1CED: “The structure of cytochrome C6 from monoraphidium braunii, NMR, minimized average structure”. Solution nmr, 1 ligand (HEM), 1 pocket (best druggability 0.70). MolNFT v1 #3008 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1CED
- Type
- protein
- Length
- 89 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C6
- UniProt
- Q09099
- Ligands
- HEM
- Pockets
- 1 · best druggability 0.70
Structure
solution nmr · 1 distinct chain · 55% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C6 | protein | 89 | 55% helix, 0% strand | Q09099 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 170 | 0.70 | 0.88 | 28 | HEM |
Modifications
Observed in the structure: 2 cofactor (heme attachment).
Compared structures
- 1CED · The structure of cytochrome C6 from monoraphidium braunii, NMR, minimized average… · the same entry in another collection · chain A against A, TM-score 1.00
- Q09099 · AlphaFold monomer V2.0 prediction for cytochrome C6 (Q09099) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q09099
- Elsewhere: RCSB PDB 1CED · PDBe 1CED · UniProt Q09099
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