MolNFT v1 · #30061 · protein

The crystal structure of the lactococcus lactis MG1363 dpsb protein

1ZS3 · Lactococcus lactis MG1363 dpsa: “The crystal structure of the lactococcus lactis MG1363 dpsb protein”. X-ray diffraction, 20 pockets (best druggability 0.80). MolNFT v1 #30061 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 1ZS3
Type: protein
Length: 2,052 residues
Chains: 12
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lactococcus lactis MG1363 dpsa
Pockets: 20 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L	Lactococcus lactis MG1363 dpsa	protein	171	79% helix, 0% strand	—

Pockets

20 pockets found on a 1 Å grid, 18 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1055	0.80	0.81	137	empty
2	1172	0.79	0.80	138	empty
3	890	0.76	0.79	94	empty
4	274	0.75	0.88	48	empty
5	313	0.73	0.86	46	empty

Interfaces

30 interfaces between chains.

A–C · 1815 Å² buried · 26 hydrogen bonds · protein-protein
J–L · 1805 Å² buried · 20 hydrogen bonds · protein-protein
B–D · 1795 Å² buried · 25 hydrogen bonds · protein-protein
F–H · 1790 Å² buried · 25 hydrogen bonds · protein-protein
I–K · 1783 Å² buried · 25 hydrogen bonds · protein-protein

Compared structures

1ZS3 · The crystal structure of the Lactococcus lactis MG1363 DpsB protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1ZS3 · PDBe 1ZS3

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