MolNFT v1 · #29927 · protein
Crystal structure of VC702 from vibrio cholerae, northeast structural genomics consortium target: VCP1
1ZNO · Hypothetical UPF0244 protein VC0702: “Crystal structure of VC702 from vibrio cholerae, northeast structural genomics consortium target: VCP1”. X-ray diffraction, 1 ligand (MG), 3 pockets (best druggability 0.68). MolNFT v1 #29927 on…
- PDB
- 1ZNO
- Type
- protein
- Length
- 330 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical UPF0244 protein VC0702
- UniProt
- Q9KU27
- Ligands
- MG
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical UPF0244 protein VC0702 | protein | 165 | 39% helix, 22% strand | Q9KU27 |
| B | Hypothetical UPF0244 protein VC0702 | protein | 165 | 36% helix, 21% strand | Q9KU27 |
Ligands and binding sites
- MG · Magnesium ion · metal · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 304 | 0.68 | 0.83 | 46 | empty |
| 2 | 318 | 0.66 | 0.81 | 39 | empty |
| 3 | 174 | 0.50 | 0.77 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 1702 Ų buried · 18 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 1ZNO · Crystal Structure of VC702 from Vibrio Cholerae, Northeast Structural Genomics Consortium… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9KU27 · AlphaFold monomer V2.0 prediction for INOSINE/XANTHOSINE triphosphatase (Q9KU27) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KU27
- Elsewhere: RCSB PDB 1ZNO · PDBe 1ZNO · UniProt Q9KU27
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