MolNFT v1 · #2990 · protein
Cardiotoxin V4/II from naja mossambica mossambica: the refined crystal structure
1CDT · Cardiotoxin VII4: “Cardiotoxin V4/II from naja mossambica mossambica: the refined crystal structure”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #2990 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1CDT
- Type
- protein
- Length
- 120 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cardiotoxin VII4
- UniProt
- P01452
- Ligands
- PO4
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cardiotoxin VII4 | protein | 60 | 0% helix, 45% strand | P01452 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 481 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 1CDT · Cardiotoxin V4/II from naja mossambica mossambica: the refined crystal structure · the same entry in another collection · chain A against A, TM-score 1.00
- P01452 · AlphaFold monomer V2.0 prediction for cytotoxin 4 (P01452) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01452
- Elsewhere: RCSB PDB 1CDT · PDBe 1CDT · UniProt P01452
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