MolNFT v1 · #29886 · protein
Crystal structure of human ALPHA_DEFENSIN-2 (variant GLY16->D-ala), P 32 2 1 space group )
1ZMI · Neutrophil defensin 2: “Crystal structure of human ALPHA_DEFENSIN-2 (variant GLY16->D-ala), P 32 2 1 space group )”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #29886 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1ZMI
- Type
- protein
- Length
- 116 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Neutrophil defensin 2
- UniProt
- P59666
- Ligands
- SO4
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Neutrophil defensin 2 | protein | 29 | 0% helix, 55% strand | P59666 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
2 interfaces between chains.
- A–B · 431 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 405 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 disulfide, 4 d-amino (disulfide, D-amino acid).
Compared structures
- 1ZMI · Crystal structure of human alpha_defensin-2 (variant GLY16->D-ALA), P 32 2 1 space group ) · the same entry in another collection · chain D against D, TM-score 1.00
- P59666 · AlphaFold monomer V2.0 prediction for neutrophil defensin 3 (P59666) · a predicted model of the same protein · chain C against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P59666
- Elsewhere: RCSB PDB 1ZMI · PDBe 1ZMI · UniProt P59666
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