MolNFT v1 · #29819 · protein

X-ray structure of the putative protein Q6N1P6 from rhodopseudomonas palustris at the resolution 2.1 a , northeast structural genomics consortium target RPR58

1ZKD · DUF185: “X-ray structure of the putative protein Q6N1P6 from rhodopseudomonas palustris at the resolution 2.1 a…”. X-ray diffraction, 7 pockets (best druggability 0.82). MolNFT v1 #29819 on GenesisL1: 3D structure, binding sites and…

PDB: 1ZKD
Type: protein
Length: 713 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DUF185
UniProt: Q6N1P6
Pockets: 7 · best druggability 0.82

Structure

x-ray diffraction · 2 distinct chains · 38% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DUF185	protein	357	38% helix, 24% strand	Q6N1P6
B	DUF185	protein	356	38% helix, 24% strand	Q6N1P6

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1031	0.82	0.83	122	empty
2	175	0.61	0.83	32	empty
3	130	0.60	0.85	30	empty
4	142	0.41	0.74	21	empty
5	149	0.39	0.73	21	empty

Interfaces

1 interface between chains.

A–B · 797 Å² buried · 15 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 16 modified (engineered).

Compared structures

1ZKD · X-Ray structure of the putative protein Q6N1P6 from Rhodopseudomonas palustris at the… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6N1P6
Elsewhere: RCSB PDB 1ZKD · PDBe 1ZKD · UniProt Q6N1P6

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