MolNFT v1 · #29789 · DNA

12MER-SPD

1ZJE · 5'-D(*AP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*T)-3': “12MER-SPD”. X-ray diffraction, 1 pocket (best druggability 0.48). MolNFT v1 #29789 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1ZJE
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(*AP*GP*GP*GP*GP*CP*GP*GP*GP*GP*CP*T)-3'; 5'-D(*TP*AP*GP*CP*CP*CP*CP*GP*CP*CP*CP*C)-3'
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	5'-D(APGPGPGPGPCPGPGPGPGPCPT)-3'	dna	12	—	—
B	5'-D(TPAPGPCPCPCPCPGPCPCPCPC)-3'	dna	12	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	261	0.48	0.74	18	empty

Interfaces

1 interface between chains.

A–B · 555 Å² buried · 62 hydrogen bonds · nucleic-nucleic

Compared structures

1ZJE · 12mer-spd · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1ZJE · PDBe 1ZJE

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