MolNFT v1 · #29650 · DNA
Ggg duplex a-DNA
1ZF9 · 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3': “Ggg duplex a-DNA”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #29650 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1ZF9
- Type
- DNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3'
- Ligands
- NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3' | dna | 10 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 519 Ų buried · 59 hydrogen bonds · nucleic-nucleic
Compared structures
- 1ZF9 · GGG Duplex A-DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1ZF9 · PDBe 1ZF9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.