MolNFT v1 · #29642 · DNA

CCC A-DNA

1ZF1 · 5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3': “CCC A-DNA”. X-ray diffraction, 1 pocket (best druggability 0.26). MolNFT v1 #29642 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1ZF1
Type: DNA
Length: 20 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3'
Pockets: 1 · best druggability 0.26

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	5'-D(CPCPGPGPGPCPCPCPGPG)-3'	dna	10	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	77	0.26	0.71	11	empty

Interfaces

1 interface between chains.

A–B · 524 Å² buried · 50 hydrogen bonds · nucleic-nucleic

Compared structures

1ZF1 · CCC A-DNA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1ZF1 · PDBe 1ZF1

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