MolNFT v1 · #29549 · protein
UFD1 exhibits the aaa-ATPase fold with two distinct ubiquitin interaction sites
1ZC1 · Ubiquitin fusion degradation protein 1: “UFD1 exhibits the aaa-ATPase fold with two distinct ubiquitin interaction sites”. Solution nmr, 2 pockets (best druggability 0.35). MolNFT v1 #29549 on GenesisL1: 3D structure, binding sites…
- PDB
- 1ZC1
- Type
- protein
- Length
- 208 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin fusion degradation protein 1
- UniProt
- P53044
- Pockets
- 2 · best druggability 0.35
Structure
solution nmr · 1 distinct chain · 19% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin fusion degradation protein 1 | protein | 208 | 19% helix, 34% strand | P53044 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 77 | 0.35 | 0.76 | 17 | empty |
| 2 | 50 | 0.34 | 0.79 | 15 | empty |
Compared structures
- 1ZC1 · Ufd1 exhibits the AAA-ATPase fold with two distinct ubiquitin interaction sites · the same entry in another collection · chain A against A, TM-score 1.00
- P53044 · AlphaFold monomer V2.0 prediction for ubiquitin fusion degradation protein 1 (P53044) · a predicted model of the same protein · chain A against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53044
- Elsewhere: RCSB PDB 1ZC1 · PDBe 1ZC1 · UniProt P53044
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